PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c5_3550V3.4.p
Common NamePHYPADRAFT_229274
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C3H
Protein Properties Length: 555aa    MW: 59794 Da    PI: 7.0672
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c5_3550V3.4.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.22.2e-06509531325
                       S---SGGGGTS--TTTTT-SS-S CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                       ++ C +f+ +  C+ G++C F H
  Pp3c5_3550V3.4.p 509 RKACIYFSTSRGCRNGSSCAFLH 531
                       678******************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.343506534IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-4510532IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
MLQDLLQAKK ARFMHALNPI VSVDLPPGFG PSSLMGVKPL VAPILPSVSW RIPECFKLDP  60
TWLVMAGEES KEVFAQKQRE NRTLEAVYPR PSAIPESPAE PSEVQLPFDE DDSNTLIIPV  120
VPLEDDELPE ADDLPTTSGS TYKSKQEPFS GLKSLSPPPG FLSTSMPVKP RTWFPVAPLE  180
NNNLSLPAHT TPAYGPPVTV NRNIIPPNGT VVQTTNMSNA RTGSLGLPVR AAEGGTEPDV  240
PAAAAAAYAA LQQSNDTTMI DRELLIKFLT NPSMLQSLSE KLAQNPPGNY GVVNRRIPES  300
VDHSGIGARG NGRVWNPTVT EHAKSGQRHL ETAVGITDPH MRHGYDRPPG FGAPSGANAL  360
GQAPPQPGQG YAHPGPLTIQ SLPLPNMPPP TSVGYDQSIV SGSGRPISQR DEQYYKDLIS  420
QHGKNEEDIW GAIGVPETGN SYPGGGRPRA SGLDREKRLG SAERTERPER TDSRARWAGR  480
EDVDMAGLSI RQGDGDQANR SGQSRGKSRK ACIYFSTSRG CRNGSSCAFL HETNNAERAK  540
RPKLEGKESN IGYR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001764994.10.0predicted protein
TrEMBLA9SFA90.0A9SFA9_PHYPA; Predicted protein
STRINGPP1S72_333V6.10.0(Physcomitrella patens)
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]